National Science Foundation
Division of Biological Infrastructure
Plant Genome Research Program
Exploiting Chromatin Landmarks to Characterize Complex Plant Genomes, Project DBI-0922447
Steve van Nocker, PI vannocke@msu.edu
28 Feb 2014 [NCBI SRA Project accession PRJNA267578]
The objective of this project is to generate genomic sequence data from a single structure (flower bud) from Malus fusca (Oregon Crab Apple), grown under field conditions. The data can be linked with ChIP-seq data targeting transcriptionally relevant modifications of histone H3. Results may be used to facilitate sequence analysis of gene-rich regions in plants with complex genomes, identify chromatin landmarks useful for genome annotation, and identify polymorphic sequences most useful for genetic map construction. The project is expected to help uncover how chromatin structure is linked to gene activity, add accuracy to annotation efforts, and uncover cryptic and previously unanticipated features of plant genomes.
Description |
Run |
Reads (M) |
Pair-End |
Fastqc files |
Sequence file (Full; ~10 GB Gzip files) |
Malus fusca, accession USDA PI_589941. Source: Flower buds from field-grown plants, ~1 week prior to anthesis (posted 28 Feb 2014) |
1 |
121.2 |
R1 |
Fastqc |
Full |
R2 |
Fastqc |
Full |
|||
2 |
145.5 |
R1 |
Fastqc |
Full |
|
R2 |
Fastqc |
Full |